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Biochemistry Core

Publications


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Biochemistry Core
Duck-Yeon Lee, Ph.D.


Full Publications Listing

Releasable SNAP-tag probes for studying endocytosis and recycling.
Cole NB, Donaldson JG.
ACS Chem. Biol. 2012 Mar 16;7(3):464-9.
[Text Abstract on PubMed]

Methionine sulfoxide reductase contributes to meeting dietary methionine requirements.
Zhao H, Kim G, Levine RL.
Arch. Biochem. Biophys. 2012 Jun 1;522(1):37-43.
[Text Abstract on PubMed]

A ubiquitin-binding protein, FAAP20, links RNF8-mediated ubiquitination to the Fanconi anemia DNA repair network.
Yan Z, Guo R, Paramasivam M, Shen W, Ling C, Fox, Wang Y, Oostra AB, Kuehl J, Lee DY, Takata M, Hoatlin ME, Schindler D, Joenje H, de Winter JP, Li L, Seidman MM, Wang W.
Mol. Cell. 2012 Jul 13;47(1):61-75.
[Text Abstract on PubMed]

Structural insights into the catalytic mechanism of Escherichia coli selenophosphate synthetase.
Noinaj N, Wattanasak R, Lee DY, Wally JL, Piszczek G, Chock PB, Stadtman TC, Buchanan SK.
J. Bacteriol. 2012 Jan;194(2):499-508.
[Text Abstract on PubMed]

Tubulin tyrosine ligase structure reveals adaptation of an ancient fold to bind and modify tubulin.
Szyk A, Deaconescu AM, Piszczek G, Roll-Mecak A.
Nat. Struct. Mol. Biol. 2011 Nov;18(11):1250-8.
[Text Abstract on PubMed]

Residue-specific fluorescent probes of a-synuclein: detection of early events at the N- and C-termini during fibril assembly.
Yap TL, Pfefferkorn CM, Lee JC.
Biochemistry. 2011 Mar 29;50(12):1963-5.
[Text Abstract on PubMed]

Copper(II) enhances membrane-bound a-synuclein helix formation.
Lucas HR, Lee JC.
Metallomics. 2011 Mar;3(3):280-3.
[Text Abstract on PubMed]

Alpha-synuclein interacts with Glucocerebrosidase providing a molecular link between Parkinson and Gaucher diseases.
Yap TL, Gruschus JM, Velayati A, Westbroek W, Goldin E, Moaven N, Sidransky E, Lee JC.
J. Biol. Chem. 2011 Aug 12;286(32):28080-8.
[Text Abstract on PubMed]

Evidence for copper-dioxygen reactivity during alpha-synuclein fibril formation.
Lucas HR, Debeer S, Hong MS, Lee JC.
J. Am. Chem. Soc. 2010 May 19;132(19):6636-7.
[Text Abstract on PubMed]

Ligand-free open-closed transitions of periplasmic binding proteins: the case of glutamine-binding protein.
Bermejo GA, Strub MP, Ho C, Tjandra N.
Biochemistry. 2010 Mar 9;49(9):1893-902.
[Text Abstract on PubMed]

Effect of dioxygen on copper(II) binding to alpha-synuclein.
Lucas HR, Lee JC.
J. Inorg. Biochem. 2010 Mar;104(3):245-9.
[Text Abstract on PubMed]

Structural basis for capping protein sequestration by myotrophin (V-1).
Zwolak A, Fujiwara I, Hammer, Tjandra N.
J. Biol. Chem. 2010 Aug 13;285(33):25767-81.
[Text Abstract on PubMed]

Small-molecule antioxidant proteome-shields in Deinococcus radiodurans.
Daly MJ, Gaidamakova EK, Matrosova VY, Kiang JG, Fukumoto R, Lee DY, Wehr NB, Viteri GA, Berlett BS, Levine RL.
PLoS ONE. 2010;5(9):e12570.
[Text Abstract on PubMed]

Interactions of the acidic domain and SRF interacting motifs with the NKX3.1 homeodomain.
Ju JH, Maeng JS, Lee DY, Piszczek G, Gelmann EP, Gruschus JM.
Biochemistry. 2009 Nov 10;48(44):10601-7.
[Text Abstract on PubMed]

Novel protective mechanism against irreversible hyperoxidation of peroxiredoxin: Nalpha-terminal acetylation of human peroxiredoxin II.
Seo JH, Lim JC, Lee DY, Kim KS, Piszczek G, Nam HW, Kim YS, Ahn T, Yun CH, Kim K, Chock PB, Chae HZ.
J. Biol. Chem. 2009 May 15;284(20):13455-65.
[Text Abstract on PubMed]

Solution NMR structure of selenium-binding protein from Methanococcus vannielii.
Suzuki M, Lee DY, Inyamah N, Stadtman TC, Tjandra N.
J. Biol. Chem. 2008 Sep 19;283(38):25936-43.
[Text Abstract on PubMed]

ERp16, an endoplasmic reticulum-resident thiol-disulfide oxidoreductase: biochemical properties and role in apoptosis induced by endoplasmic reticulum stress.
Jeong W, Lee DY, Park S, Rhee SG.
J. Biol. Chem. 2008 Sep 12;283(37):25557-66.
[Text Abstract on PubMed]

Mutagenesis and modeling of the peroxiredoxin (Prx) complex with the NMR structure of ATP-bound human sulfiredoxin implicate aspartate 187 of Prx I as the catalytic residue in ATP hydrolysis.
Lee DY, Park SJ, Jeong W, Sung HJ, Oho T, Wu X, Rhee SG, Gruschus JM.
Biochemistry. 2006 Dec 26;45(51):15301-9.
[Text Abstract on PubMed]

1H, 15N, and 13C chemical shift assignments of the human Sulfiredoxin (hSrx).
Lee DY, Rhee SG, Ferretti J, Gruschus JM.
J. Biomol. NMR. 2005 Aug;32(4):339.
[Text Abstract on PubMed]

Substitution of aspartic acid with glutamic acid increases the unfolding transition temperature of a protein.
Lee DY, Kim KA, Yu YG, Kim KS.
Biochem. Biophys. Res. Commun. 2004 Jul 30;320(3):900-6.
[Text Abstract on PubMed]

Eotaxin and monocyte chemotactic protein-3 use different modes of action.
Chung IY, Kim YH, Choi MK, Noh YJ, Park CS, Kwon DY, Lee DY, Lee YS, Chang HS, Kim KS.
Biochem. Biophys. Res. Commun. 2004 Feb 6;314(2):646-53.
[Text Abstract on PubMed]

The RING-H2-finger protein APC11 as a target of hydrogen peroxide.
Chang TS, Jeong W, Lee DY, Cho CS, Rhee SG.
Free Radic. Biol. Med. 2004 Aug 15;37(4):521-30.
[Text Abstract on PubMed]

Mutational effects on thermostable superoxide dismutase from Aquifex pyrophilus: understanding the molecular basis of protein thermostability.
Lim JH, Hwang KY, Choi J, Lee DY, Ahn BY, Cho Y, Kim KS, Han YS.
Biochem. Biophys. Res. Commun. 2001 Oct 19;288(1):263-8.
[Text Abstract on PubMed]

A thioredoxin from the hyperthermophilic archaeon Methanococcus jannaschii has a glutaredoxin-like fold but thioredoxin-like activities.
Lee DY, Ahn BY, Kim KS.
Biochemistry. 2000 Jun 6;39(22):6652-9.
[Text Abstract on PubMed]